CVRI Research and Training Programs

Cardiovascular Research Institute Research Training Program



The Cardiovascular Research Institute's Research Training Program is designed for postdoctoral (M.D. or Ph.D.) fellows or other trainees who are appointed for a one-, two-, or three-year period. The main purpose of the program is to provide in-depth research training in a specific field of biomedicine under the direct supervision of a CVRI investigator. The program also offers courses that help fellows and other trainees more fully develop the ability to speak and write effectively. The program does not lead to an advanced degree.

Below are detailed descriptions of the CVRI's Art of Lecturing Course and Scientific Writing Course followed by brief descriptions of two CVRI conferences and several other conferences, courses, seminars, and clubs of interest to CVRI fellows and other trainees.

Updated: February 2006.

CVRI COURSES and Related Conferences

The Cardiovascular Research Institute offers two courses useful to research scientists: the Art of Lecturing Course and the Scientific Writing Course. These courses are open to all research trainees (fellows, visiting scientists, post-graduate researchers, and graduate students) who work with CVRI faculty; research trainees in other institutes and departments at UCSF are welcome as space permits.

1. THE ART OF LECTURING COURSE (Physiology 302) (updated February 2006)

Instructors:

  • Donald M. McDonald, M.D., Ph.D., John V. Fahy, M.D., Mimi Zeiger, M.A. , (415) 476-5730, mimi.zeiger@ucsf.edu

Goal:

  • To help researchers improve their lecturing skills for teaching purposes, research talks, job interviews, and talks at national and international meetings.  The atmosphere is positive, supportive, and friendly.  Participants learn both by giving their own talks and by critiquing others' talks.

Topics:

  • Demonstration talk
  • Critique of the demonstration talk
  • Principles for giving clear talks
  • How to prepare a talk
  • What makes a good illustration for a talk
  • Talks by class members
  • Stagefright (dealt with individually)

Text:

  • Handouts prepared by the instructors

Schedule:

  • One class a year, beginning in January and lasting 10 weeks, on the Parnassus campus
  • 3:00 - 6:00 p.m., Mondays
  • A second class, in summer, meets at the Gladstone Institutes (Mission Bay).  Instructors: Robert W. Mahley, M.D., Ph.D., Douglas Nixon, M.D., Ph.D., Mimi Zeiger, M.A.

Enrollment:

  • Limited to 15 participants.

Attendance:

  • Attendance at all 10 sessions of the class is required.

Homework:

  • Preparation of two talks:
    • A 20-minute talk on a scientific topic of the speaker's choice
    • A 20-minute "chalk talk," a 20-min revision of the first talk, a 10-min talk based on the first talk, or a new 20-minute talk

Class Activities:

  • Presenting two talks
  • Listening to and critiquing classmates' talks

Description:

  • First two sessions: instruction
  • Next eight sessions:  talks by class members
  • The audience consists of the other class members and the instructors.
  • Each talk is videotaped.
  • After the talk, the speaker watches the DVD privately while the class discusses the strengths of the talk and makes suggestions for improvement.
  • The discussion is also videotaped.
  • Then the speaker rejoins the group, one of the instructors summarizes the group's comments, and the speaker responds to the comments.
  • The process is then repeated for the second speaker.
  • At the end of the course, each participant keeps the DVDs of the talk and the discussion of the talk.

Follow-up:

  • Working individually with Mimi Zeiger on talks being prepared for presentation

Background:

  • Experience designing and performing experiments and analyzing data, including statistical analysis as needed
  • Fluency in English

Enrolling:

  • One to two months before each class begins, trainees in the CVRI, the Gladstone Institutes, and other fellows at UCSF will receive an announcement of the Art of Lecturing course by e-mail.  Fill in the form and return it to Mimi Zeiger.  She will contact you to arrange for an interview, mainly to discuss your background, schedule, and commitment to the course.  If you do not get a form, or if you have any questions, you can contact Mimi Zeiger at (415) 476-5730 or mimi.zeiger@ucsf.edu.
  • Junior faculty, fellows, visiting scientists, post-graduate researchers, and graduate students from other institutes or departments at UCSF are welcome to enroll in the Art of Lecturing course as space permits.  Please contact Mimi Zeiger at (415) 476-5730 or mimi.zeiger@ucsf.edu.

2. SCIENTIFIC WRITING COURSE (Physiology 301) (updated February 2006)

Instructor:

Goal:

  • To help researchers learn how to write clear papers for publication in scientific journals.  The emphasis is on sending a clear message and telling a clear story.

Topics:

  • Building blocks of writing: word choice, sentence structure, paragraph structure (7 sessions)
  • Structure of the parts of a scientific paper:  introduction, materials and methods, results, discussion, figures and tables, abstract, title (7 sessions)
  • The writing and publishing processes (1 session)

Texts:

  • Zeiger, M. Essentials of Writing Biomedical Research Papers. 2nd ed. New York: McGraw-Hill; 2000.
  • Strunk W, White EB. The Elements of Style, 4th ed. New York: Allyn & Bacon; 2000

Schedule:

  • Three classes a year, each class having 15 sessions over 10 - 12 weeks
    • winter (Jan. - Mar.) in the CVRI (Parnassus campus), for European- and English-language fellows
    • summer (June - Aug.) at the Gladstone Institutes (Mission Bay) for European- and English-language fellows
    • fall (end of Sept. - Dec.) in the CVRI (Parnassus or Mission Bay), for Asian-language fellows 
  • 4:00 - 6:00 p.m., Mondays or Tuesdays and some Fridays

Enrollment:

  • Limited to 13 participants

Attendance:

  • Attendance at all 15 sessions of the class is required.

Homework:

  • Rewriting examples of unclear writing
  • Rewriting an introduction, results section, and discussion for a paper of your own
  • Reading the textbook
  • Time needed for homework:  2 - 3 h per class session; more time if writing is difficult for you or if English is not your native language.
  • All exercises are critiqued by the instructor and returned to the participants at the next class session.

Class Activities:

  • Lectures (33%)
  • Discussion of examples from published papers (33%)
  • Discussion of revisions of exercises (16%)
  • Participants' critique and discussion of each other's introduction, results, and discussion (16%)

Description:

  • This course begins with the smallest unit of writing (word choice) and works up to the largest unit (the paper as a whole).  The course is developmental--later concepts (for the parts of the paper) build on earlier concepts (word choice, sentence structure, paragraph structure).

Follow-up:

  • Working individually with Mimi Zeiger on papers being prepared for publication

Background:

  • Experience designing and performing experiments and analyzing data, including statistical analysis as needed
  • Fluency in English
  • Experience in writing a paper, a poster, an abstract, or a grant application

Enrolling:

  • One to two months before each class begins, trainees in the CVRI, the Gladstone Institutes, and other fellows at UCSF will receive an announcement of the Scientific Writing course by e-mail.  Fill in the form and return it to Mimi Zeiger.  She will contact you to arrange for an interview, mainly to discuss your background, schedule, and commitment to the course.  If you do not get a form, or if you have any questions, you can contact Mimi Zeiger at (415) 476-5730 or mimi.zeiger@ucsf.edu.
  • Junior faculty, fellows, visiting scientists, post-graduate researchers, and graduate students from other institutes or departments at UCSF are welcome to enroll in the Scientific Writing course as space permits.  Please contact Mimi Zeiger at (415) 476-5730 or  mimi.zeiger@ucsf.edu.

CVRI SPECIALIZED CONFERENCES

3. Pulmonary Physiology Conferences (updated February 2006)

8:00 - 9:30 a.m. Fridays, July through June, HSE-1303
Instructor: Dr. Warren Gold, (415) 476-2092, warren.gold@ucsf.edu
At these meetings, the group reviews the classical physiological concepts that are the basis for the current tests used in the human pulmonary function laboratory. Wherever possible, these concepts are illustrated by examples obtained in patients. The group then considers how to gain additional clinical and research data on particular facets of the respiratory or pulmonary problem. For more information, go to http://itsa.ucsf.edu/~apflab/

4. Neonatal Research Seminars (updated February 2006)

2:00 - 4:00 p.m., Tuesdays, S-980
Instructors: Dr. Joseph Kitterman (415) 476-7242, kittermj@peds.ucsf.edu
Dr. Samuel Hawgood (415) 476-2908, hawgood@peds.ucsf.edu
Members of the neonatology group or invited speakers give seminars on research in progress at these weekly meetings.

DEPARTMENTAL OR CAMPUS-WIDE CONFERENCES, COURSES, SEMINARS, AND CLUBS OF SPECIAL INTEREST TO CVRI FELLOWS AND OTHER TRAINEES

5. Adult Cardiac Catheterization Conference (updated February 2006)

4:00 - 5:30 p.m., Thursdays, July through June, N-721 and LPI auditorium
Instructor: Dr. Thomas Ports (415) 476-4315, ports@medicine.ucsf.edu
This is a weekly conference that evaluates patients with cardiovascular disorders who have been thoroughly studied by invasive and noninvasive techniques. This conference emphasizes analysis of the physiological disorders and decision-making for further medical or surgical care.

6. Pediatric Cardiac Catheterization Conference (updated February 2006)

3:00 - 5:00 p.m., Fridays, July through June, M-666
Instructor: Dr. David Teitel, (415) 476-8488, dteitel@pedcard.ucsf.edu
This conference centers on infants, children, and adults with congenital heart disease who have recently undergone either a diagnostic or a therapeutic (interventional) cardiac catherization. The staff discusses the indications for the catheterization, the results of the diagnostic studies and of the interventions, and develops a plan of management.

7. Pulmonary Tri-Hospital Conference (updated February 2006)

4:30 - 5:30 p.m., Tuesdays, July through June
Instructors: Dr. Courtney Broaddus, (415) 206-3513, cbroaddus@medsfgh.ucsf.edu
Dr. Hal Chapman, (415) 514-0896, hal.chapman@ucsf.edu
These conferences are designed to present to fellows and other trainees important case-based topics in pulmonary disease with emphasis on the correlation of basic medical sciences and clinical medicine.

8. Biophysics 201: Cellular Biophysics (updated February 2006)

Winter quarter, Monday, Wednesday, Friday, 10:30 - 11:50 a.m., QB3 212
Instructor: Dr. Roger Cooke, (415) 476-4836, cooke@cgl.ucsf.edu
This course covers the structure, energetics, and dynamics of cells and cell organelles. The course consists of 20 one-and-a-half-hour lectures and a one-hour discussion. The discussion covers either an assigned paper or a problem set. The course is graded on a series of problem sets plus a summary problem set/final examination at the end of the course. For more information, go to http://picasso.ucsf.edu/~mollyd/

9. Biophysics 202: Biophysical Methods (updated February 2006)

Fall quarter, Schedule and content to be announced
Instructor: Dr. Dan Minor, (415) 514-2551, daniel.minor@ucsf.edu
The course consists of 12 one-and-a-half-hour lectures on molecular structures and conformations, macromolecular complexes, spectroscopic methods, determination of molecular size, shape, and thermal properties, and diffraction and imaging methods.

10. Biophysics 204: Macromolecular Structure and Interactions (updated February 2006)

Winter quarter, Schedule to be announced
Course Director: Dr. Robert Stroud, (415) 476-4224, stroud@msg.ucsf.edu
An upper level course that focuses on the physical principles underlying macromolecular structures and their functional interactions. This course introduces protein structure, intramolecular forces, properties of amino acids and their roles, and protein folding and dynamics. These topics are followed by sections on the principles of catalysis, signaling by transmembrane proteins, protein-protein interactions, and one-on-one protein-nucleic acid interactions. The course aims to reach a level necessary for a critical appraisal of current literature. For more information, go to http://msg.ucsf.edu/macro/

11. Biophysics 206: Computation of Biological Molecules (updated February 2006)

Spring quarter 2007; alternates yearly with Chemistry 262.
Instructor: Dr. Matt Jacobson, (415) 514-9811, matt@cgl.ucsf.edu
A survey of computational methods used in the study of biomolecules. Topics covered are modeling of molecular interactions and dynamics; approaches for protein folding and drug design; and computational methos for NMR, X-ray, and microscopy. For more information, go to http://biophysics.ucsf.edu

12. Biostatistics 183: Introduction to Statistical Analysis (updated February 2006)

Fall quarter, Tuesdays and Thursday, 10:00 - 12:00 noon, N-225
Instructor: Dr. Stanton Glantz, glantz@medicine.ucsf.edu
This course provides an introduction to the use of statistical techniques in biomedical and behavioral research. The course covers common descriptive statistics including mean and standard deviation as well as techniques for testing hypotheses (analysis of variance, t-tests, regression, nonparametric methods), issues in sampling, and methods to use to analyze your own data. This course also provides a basis for more advanced coursework in biostatistics. For more information, go to http://www.epibiostat.ucsf.edu/courses/schedule/intro statistics.html

13. Biomedical Sciences/Molecular Medicine Seminars (updated February 2006)

4:00 p.m., Wednesdays, October through May, N-225
Contact Monique Piazza, (415) 476-2189, piazzam@bms.ucsf.edu
These seminars present lectures on cutting-edge research related to human health and disease, presented by local and visiting scientists.

14. Biomedical Sciences Journal Club (updated February 2006)

12:00 - 1:00 p.m., Thursdays, September through June
Contact Rachel Brebach, (415) 476-0284, brebachr@bms.ucsf.edu
Talks on current journal articles of wide interest, presented by BMS students and faculty.

15. Vascular Biology Club (updated February 2006)

12:00 – 1:00 p.m., 3rd Wednesday of every month
Contact David Cash, (415) 476-4564, werbaa@itsa.ucsf.edu
Lectures present local and visiting experts in the field of vascular biology
For more information, google "vascular biology website" or go to werbaa@itsa.ucsf.edu

16. Gladstone Institute of Cardiovascular Disease/CVRI Seminars (updated August 2006)

http://www.gladstone.ucsf.edu/gladstone/site/gicd/section.php?id=1653


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